Day 12 of Aquarium Cycling: Say Hello to the Brown Algae (And Why It’s Actually a Good Sign)
















If you’ve recently started a new aquarium, especially a fishless cycle, and you’re suddenly seeing a soft, brown film creeping across your glass, decorations, and substrate—don’t panic. You’re not alone. On Day 12 of my aquarium cycling journey, I opened the lid to find a faint but unmistakable layer of brown algae spreading across the tank. At first glance, it was easy to feel discouraged. But after doing some research (and calming my inner aquarist perfectionist), I realised this is not only normal—it’s a sign that my tank is progressing exactly as it should.

What Is This Brown Stuff?

The brown film I’m seeing is most likely diatoms, a type of microscopic algae commonly referred to as "brown algae" in the aquarium world. They thrive in new tanks during the early stages of the nitrogen cycle. Diatoms feed on silicates and available nutrients in the water—elements that are often more abundant in a fresh setup, especially if your tap water contains traces of silicates or if you’re using certain substrates.

Unlike the stubborn green hair algae or the dreaded black beard algae, diatoms are typically soft, powdery, and easy to wipe off. They often appear as a rust-coloured, velvety film on the glass, plants, and hardscape.

Why Are They Showing Up Now?

Diatoms are one of the first colonisers in a new ecosystem. They don’t mean your tank is dirty or poorly maintained—in fact, quite the opposite. Their presence is a natural response to the immature biological balance in a newly established aquarium. In the absence of a fully established colony of beneficial bacteria (the ones that process ammonia and nitrites), nutrients can spike, and light conditions may be skewed, creating a perfect environment for diatoms to flourish.

This is especially common during fishless cycling when there’s no livestock to compete for resources and light cycles haven’t yet been optimised.

Does Brown Algae Mean My Tank Is Cycled?

Not quite. While it’s a positive sign that your tank is maturing, brown algae do not indicate that your cycle is complete. The presence of diatoms suggests that biological processes are starting, but you still need to monitor your water parameters closely. I’m testing daily for ammonia, nitrites, and nitrates to track progress.

A fully cycled tank will show:

  • 0 ppm ammonia
  • 0 ppm nitrites
  • Detectable nitrates

Until then, patience—and consistency—is key.

How to Manage Brown Algae During Cycling

While diatoms usually fade on their own within 2 to 6 weeks as the tank stabilises and beneficial bacteria take over, there are a few things you can do to help things along:

1.     Reduce Lighting Duration
I’ve cut my lighting down to 6 hours per day. Diatoms rely on light to photosynthesise, so reducing exposure can slow their growth without harming future plant development (if you plan to add live plants later).

2.     Avoid Scrubbing Too Often
Light wiping with a clean algae pad is fine, but aggressive cleaning can stir up nutrients and may stress the developing ecosystem. Since diatoms are temporary, I’m opting for minimal intervention unless they’re completely obscuring the glass.

3.     Don’t Add Algae Eaters (Yet!)
It’s tempting to introduce algae-eating crew like nerite snails or otocinclus—but remember, this is a fishless cycle. These critters need a fully cycled tank to survive. Introducing them too early could be harmful. Wait until cycling is complete and the tank is safe for livestock.

4.     Be Patient
The best treatment? Time. As your beneficial bacteria colonies grow and outcompete the diatoms for nutrients, the brown film will gradually disappear. It’s a natural rite of passage for new aquariums.

The Bigger Picture: Celebrating Progress

Seeing brown algae was a little disheartening at first—after all, we dream of crystal-clear water and lush greenery from day one. But it’s important to reframe this. Diatoms are not a setback; they’re a sign that life is beginning in your tank. They indicate that biological processes are kicking in, that nutrients are cycling, and that your little aquatic world is coming to life.

This journey is about balance, observation, and learning to trust the process. My tank may not be “Instagram-ready” yet—but by Day 12, it’s clearly on its way.

Final Thoughts

So, if you’re seeing brown algae pop up during your fishless cycle, breathe easy. It’s normal. It’s temporary. And it’s a quiet whisper from your tank saying, “I’m getting there.”

Stay tuned for the day when I hope to be celebrating not just the disappearance of diatoms, but a fully cycled, stable aquarium ready for its first happy fish residents.

Until then: less light, more patience, and keep testing those water parameters.

Happy cycling! 🐟🌱

Dave —Your fellow aquarium enthusiast, one wipe-down at a time.

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